Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903240.1_cds_XP_016453220.1_47368
CDS Infomation

[gene=LOC107777650] [db_xref=GeneID:107777650] [protein=protein transport Sec1a-like] [protein_id=XP_016453220.1] [location=join(9511..9583,11358..11416,14247..14328,14706..14784,15152..15202,15316..15412,15530..15562,15836..15964,16242..16430,16516..16599,16676..16774,16857..16927,17933..18029,18526..18651,18748..18843,19677..19793,19881..19958,20658..20866,21048..21138,21234..21323,21868..21921)] [gbkey=CDS]
Sequence

ATGTCATTTTCAGATTCAGAAACGTCCTCCCATGGCACAGAGTATAAGAATTTCAAGCAT
GTCAGCCGTGATCGACTATTACATGAAATGCTTGGATCTTCAGGTTCAGGAGATTCAAGA
TCTTCATGGAAGGTTCTTATCATGGATAAAGTAACAGTAAAAGTAATGTCTTCCACATGC
AAAATGGCTGATATCACAGACCAAGGAGTTTCATTGGTGGAAGATCTTTTTAGAAGAAGG
CAACCTTTACCAACAATGGATGCTATTTACTTCATCCAACCGTCAAAGGAGAACGTTGTC
ATGTTCTTGTCCGATATGTCAGGAAGAGAACCTTTATACAGGAAAGCATATGTATACTTC
AGTTCCCCAATACCTAAGGACCTGGTTGCCCGCATCAAGAATGACACAAGTGTAATACCC
CGTATAGGTGCACTAGGAGAGATGAATTTGGAGTACTTCCCAATAGACAGCCAGGGATTT
GTCACTGACCATGAAAGAGCACTTGAAGAGTTGTTTGGTGAAAGTGCTCAAAATTCCCGG
CGTACTGATGCTTGCTTGAATGTAATGGCCACAAGAATTGCCACTGTTTTTGCTTCGCTG
AAGGAATTTCCTTTTGTGCGTTATCGAGGTCCCAAGGGACGTGATGGATCAACAACAAAT
TTCCGTGAATTAGTTCCTGAAAAGCTCGCTACAGCTATATGGAACAATATCACTATGTAT
CGGTCTAGTATTCCTAATTTTCCGCAGAAAGAGACATGTGAATTACTGATTCTGGACAGA
TCTGTTGACCAGATTGCTCCTGTGATTCATGAATGGACATATGATGCCATGTGTCATGAC
CTGCTTGATATGGATGGAAATAAATACGTACATGAGGTTCCTAGCAAATCAGGTAGTCCA
CCTGAGAAGAAGGAAGTTCTTTTGGAAGATCAGGATCCTGTTTGGTTGGAGCTACGGCAT
ACTCATATAGCTGATGCTAGTGAACGACTCCACGATAGGTTTACAAACTTCGTTTCTAAG
AACAAAGCAGCACAGATGGAGCAGAGAGATGGAGGTGAATTATCTACACGGGACTTGCAG
AAGATGGTCCAAGCTTTGCCACAGTATAATGAACAAAAGGAGAGACTCTCTATCCATGTT
GAGATTGCAGGTGAGCTTAATAAAGTTATCCGAGAAATGGGTCTTCGGGAACTTGGACAG
CTAGAGCAGGATCTTGTCTTTGGCGATGCAGGAACGAAGGAAATTATCCATTTTCTAAGG
ACGAAGCAGGATACTGCAGGTGAAAATAAGTTGCGTTTGATGATGATTTATGCATCTGTT
TATCCAGAAAAATTTGAGGGCGACAAAGCAGCAAAATTGATGCAGTTAGCAAAACTGTCA
CCTGAGGATATGAAGGCGGTGAAAAATATGAGAATGCTGGAGGGTTCAGAAAAACGGAAG
GCGTCAAGTGGAAGCTTCTCCCTGAAGTTTGATTCACAAAAGAAAGGGAAAGCAGCTAGA
CAGGATCGAACTGGAGAGGAAGAAACATGGCAGTTATTCCGTTTTTATCCCGTGATAGAG
GAGTTGGTTGAGAAAATGTGTAAAGGTGACTTGCCAAAAGATGATTATCAATGCATGAAC
AGTCCTCAACCAGCTACTCGTGAGGTCAATGGATCTTCTGTAAGGAATGCCCCACCAAAG
ACTGCTGAATCTACTAATCCACGCTCAGTGAGATCAAGAAGGACGCCAAATTGGGCACGT
TCTCGTACTTCTGACGATGGATATTCAAGCGACTCTAATCTCAGAAGTTTTTCAACTGAT
TTTAAGAACATGGGACAGCGGATATTTGTTTTCATTATCGGTGGTGCAACTCGATCTGAG
CTTAGGGTTTGTCACAAACTTACATCAAAGTTAAGGAGGGAAGTGGTCCTTGGCACAACT
AGTCTAGATGATCCACCTCAGTACATCACGAAACTGAAATTGCTATCAGAGAAAGAACTT
TCAGTAGATAGCCTCAGAATTTAA

Peptide Sequence

PEP ID

XP_016453220.1
PEP Infomation

PREDICTED: protein transport Sec1a-like [Nicotiana tabacum]
Sequence

MSFSDSETSSHGTEYKNFKHVSRDRLLHEMLGSSGSGDSRSSWKVLIMDKVTVKVMSSTC
KMADITDQGVSLVEDLFRRRQPLPTMDAIYFIQPSKENVVMFLSDMSGREPLYRKAYVYF
SSPIPKDLVARIKNDTSVIPRIGALGEMNLEYFPIDSQGFVTDHERALEELFGESAQNSR
RTDACLNVMATRIATVFASLKEFPFVRYRGPKGRDGSTTNFRELVPEKLATAIWNNITMY
RSSIPNFPQKETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVHEVPSKSGSP
PEKKEVLLEDQDPVWLELRHTHIADASERLHDRFTNFVSKNKAAQMEQRDGGELSTRDLQ
KMVQALPQYNEQKERLSIHVEIAGELNKVIREMGLRELGQLEQDLVFGDAGTKEIIHFLR
TKQDTAGENKLRLMMIYASVYPEKFEGDKAAKLMQLAKLSPEDMKAVKNMRMLEGSEKRK
ASSGSFSLKFDSQKKGKAARQDRTGEEETWQLFRFYPVIEELVEKMCKGDLPKDDYQCMN
SPQPATREVNGSSVRNAPPKTAESTNPRSVRSRRTPNWARSRTSDDGYSSDSNLRSFSTD
FKNMGQRIFVFIIGGATRSELRVCHKLTSKLRREVVLGTTSLDDPPQYITKLKLLSEKEL
SVDSLRI

Transcript Sequence

Gene sequence data has not been registered.